miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum subsp. maritimus



ABOUT THIS RECORD

ID: MNEST002380
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTCTTCCTCTTCCTCTTGGG

miRNA*
ATAGAGGAGGAGGAGGAGCAG

mismatches: 4
bulges: 0

View larger
pre-miRNA
ATCGATCAATCAATAGAGGAGGAGGAGGAGCAGCAGATCTGTGGCCGTCCGCCGTGCAGTAATTATGGGCGTTATTAAATTTGGAGTCTTCCTCTTCCTC
TTCCTCTTGGG
GCTGACCAC


dot-bracket secondary structure
.....(((.((...((((((((((((((((...(((((.((....((((((..((......))..))))))....)).)))))........)))))))))
)))))))...)
).)))....



SIMILARITIES
miRBase mtr-MIR2673a: 0.000006

PMRD no hits

microPC no hits
UniProt no hits

RFAM 7SK: 0.0004
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;